Skip to content

complex
complex
Commit 5daf7c37 authored by Niklas Mähler's avatar Niklas Mähler
Browse files
Options

Very specific changes for the current version to work 

These changes are essentially bad. There are hard-coded thresholds and
whatnot. As soon as possible this should be made more flexible.
parent c6201ed0
Hide whitespace changes
Inline Side-by-side
Showing with 23 additions and 19 deletions
db.php
View file @ 5daf7c37
......@@ -11,7 +11,7 @@ $dbConn = mysql_connect(
$db = mysql_select_db("plaza_complex", $dbConn) or die("Could not select DB");
$spNames = array("pt" => "P. Triocharpa", "at" => "A. Thaliana", "os" => "O. Sativa");
$spNames = array("pt" => "P. tremula", "at" => "A. thaliana", "os" => "Z. mays");
if (isset($_POST['op'])) $tmp_op=trim($_POST['op']);
if (isset($_GET['op'])) $tmp_op=trim($_GET['op']);
......
index.php
View file @ 5daf7c37
......@@ -93,13 +93,13 @@ if ( isset($_SERVER["REMOTE_ADDR"]) ) {
</table>
<table id="sub_table" width="100%" border="0">
<tr >
<td width="140px">co-expression:<span id="th1_span">(>=3)</span>
<td width="140px">co-expression: <span id="th1_span">(>=0.990)</span>
</td>
<td>
<table border="0" cellpadding="0" cellspacing="0" >
<tr>
<td width="100px"></td>
<td width="700px"> <input data-slider="true" data-slider-range="3,10" id="th1" name="th1" data-slider-step="0.5" value="3" type="text" data-slider-snap="true" data-slider-highlight="true" />
<td width="700px"> <input data-slider="true" data-slider-range="0.95,1" id="th1" name="th1" data-slider-step="0.001" value="0.99" type="text" data-slider-snap="true" data-slider-highlight="true" />
</td>
<td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td>
<td >&nbsp; <button style="font-size:10px;text-transform:none" onClick="coexpressiontrclick();" id="coexpressiontrclickbtn" class="btn btn-4 btn-4c">Show conservation slider</button></td>
......@@ -108,11 +108,11 @@ if ( isset($_SERVER["REMOTE_ADDR"]) ) {
</td>
</tr>
<tr style="display:none" id="conservation_slider">
<td width="140px">conservation:<span id="consth1_span">(>=3)</td>
<td width="140px">conservation: <span id="consth1_span">(0.1)</td>
<td >
<table border="0" cellpadding="0" cellspacing="0" >
<tr >
<td width="800px" ><input data-slider="true" data-slider-range="2,10" id = "consth1" name="consth1" data-slider-step="0.5" value="3" type="text" data-slider-snap="true" data-slider-highlight="true"/></td>
<td width="800px" ><input data-slider="true" data-slider-range="0.001,0.1" id = "consth1" name="consth1" data-slider-step="0.005" value="0.1" type="text" data-slider-snap="true" data-slider-highlight="true"/></td>
</tr>
</table>
</td>
......
js/complex.js
View file @ 5daf7c37
......@@ -724,20 +724,20 @@ window.onload = function() {
display: "A. thaliana",
value: "at"
}, {
display: "P. trichocarpa",
display: "P. tremula",
value: "pt"
}, {
display: "P. abies",
display: "Z. mays",
value: "os"
}];
var t = [{
display: "P. trichocarpa",
display: "P. tremula",
value: "pt"
}, {
display: "A. thaliana",
value: "at"
}, {
display: "P. abies",
display: "Z. mays",
value: "os"
}];
populate_select_options(t, "#sp_1");
......
service/final_post.php
View file @ 5daf7c37
......@@ -36,23 +36,27 @@ $first_query='SELECT '.$tmp_sp1.'_i,'.$tmp_sp1.'_id FROM '.$tmp_sp1.'Gene WHERE
$first_query_results = mysql_query($first_query);
$a1=0;
while ($row=mysql_fetch_row($first_query_results)){
while ($row=mysql_fetch_row($first_query_results)) {
$first_array[$a1]['id']=$row[0];
$first_array[$a1]['label']=$row[1];
$a1++;}
$a1++;
}
if($debug==true){print("<strong>----------------1.) QUERY >> FIRST NETWORK</strong></br>");}
if($debug==true){print($first_query);}
$first_sp_1_array=array_column2($first_array, 'id');
$first_sp_1_array_string=implode(',',array_values(array_unique($first_sp_1_array)));
$second_array=array();
if($tmp_showN=='align'){
if($debug==true){print("<br><strong>----------------2.) QUERY >> ALIGN BOTH NETWORKS</strong></br>");}
$second_query='SELECT '.$tmp_sp1.'_i,'.$tmp_sp2.'_i FROM '.$tabln.'Nod WHERE '.$tmp_sp1.'_i IN ('.$first_sp_1_array_string.') AND type="c" AND corr = 2';
if($debug==true){print($second_query);}
}else{
if($debug==true){print("<br><strong>----------------3.) QUERY >> COMPARE BOTH NETWORkS</strong></br>");}
$second_query='SELECT '.$tmp_sp1.'_i,'.$tmp_sp2.'_i FROM '.$tabln.'Nod WHERE '.$tmp_sp1.'_i IN ('.$first_sp_1_array_string.') AND '.$tmp_sp2.'_i IN(SELECT '.$tmp_sp2.'_i FROM '.$tmp_sp2.'Gene WHERE '.$tmp_sp2.'_id in('.$gstr2.')) AND type="c" AND corr = 2';
if($debug==true){print($second_query);}
if($debug==true){print("<br><strong>----------------2.) QUERY >> ALIGN BOTH NETWORKS</strong></br>");}
$second_query='SELECT '.$tmp_sp1.'_i,'.$tmp_sp2.'_i FROM '.$tabln.'Nod WHERE '.$tmp_sp1.'_i IN ('.$first_sp_1_array_string.') AND type="c" AND corr = 0.1';
if($debug==true){print($second_query);}
} else {
if($debug==true){print("<br><strong>----------------3.) QUERY >> COMPARE BOTH NETWORkS</strong></br>");}
$second_query='SELECT '.$tmp_sp1.'_i,'.$tmp_sp2.'_i FROM '.$tabln.'Nod WHERE '.$tmp_sp1.'_i IN ('.$first_sp_1_array_string.') AND '.$tmp_sp2.'_i IN(SELECT '.$tmp_sp2.'_i FROM '.$tmp_sp2.'Gene WHERE '.$tmp_sp2.'_id in('.$gstr2.')) AND type="c" AND corr = 0.1';
if($debug==true){print($second_query);}
}
$second_query_results = mysql_query($second_query);
$a2=0;
......
service/getthepvalue.php
View file @ 5daf7c37
......@@ -26,7 +26,7 @@ $query_string = 'SELECT pval,type,'.$sp2.'Gene.'.$sp2.'_i as K,'.$sp2.'Gene.'.$s
FROM '.$tabln.'Nod
INNER JOIN '.$sp2.'Gene on ('.$tabln.'Nod.'.$sp2.'_i = '.$sp2.'Gene.'.$sp2.'_i)
WHERE '.$tabln.'Nod.'.$sp1.'_i IN ('.$gstr2.')
AND corr = 2 AND type = "c"'; #D added correlation, should be set as a variable in the end
AND corr = 0.1 AND type = "c"'; #D added correlation, should be set as a variable in the end
$result = mysql_query($query_string) or die(mysql_error());
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment